Hacker Newsnew | past | comments | ask | show | jobs | submitlogin

well here's a big surprise of BWT

BWT is a transformation transforming a string into "suffix tree space"

You can do searches - very fast searches - in BZ2/BWT compression space

Discussed in the '90s in the legendary dr. dobbs

But more significantly, BWT is the basis for most DNA and RNA sequence aligners nowadays - which perform string search/matching in suffix tree (transformed) space. It's like doing frequency stuff in fourier domain, it's like adding is multiplication in logspace - but in weird data string search space. The BWT.



Guidelines | FAQ | Lists | API | Security | Legal | Apply to YC | Contact

Search: